PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G026600.3
Common NameB456_009G026600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 313aa    MW: 33806.4 Da    PI: 7.2219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G026600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000172222601255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.009G026600.3 222 RKEKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 260
                         6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.496210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-5220264No hitNo description
SuperFamilySSF474598.9E-10220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8224271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNRGVLQSSP VQQLMAGNPN WWNINTMRPP THHHQQAAAV AAAPSPFLHP PPTTFFSHTP  60
TSSSSSSSSS SLPVPSWHDN NQELPESWSQ LLLGGLVGEE EKGGDIGQFQ ALHQVSNANS  120
VVDVKQENSA SSYVYGHASE DFHHHQANKP AWFHQISSAA SSPKSSVTSF SSNMLDFSGN  180
KAEHGRQPQP DRSSECNSTA TGGPLKKPRV QPSATQSTLK VRKEKLGDRI TSLHQLVSPF  240
GKTDTASVLS EAIGYIRFLQ SQIEDCKEEA KKDLRSRGLC LVPVSCTLEV WSGDNGADYW  300
APPPALGAGF FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5279189e-99HQ527918.1 Gossypium herbaceum clone NBRI_B2_1719 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447341.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D13e-49BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2TI310.0A0A0D2TI31_G
STRINGVIT_11s0016g03560.t011e-119(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-39bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]